I developed some software a few years back. I’m in the process of moving my Discrete Network Dynamics over to SourceForge for others to use. It can be used for analyzing the state spaces of multi-state discrete time discrete dynamical systems, usually associated with gene regulatory networks. You can find the project here: http://sourceforge.net/projects/discretenetwork/ it is still in progress, but I’m hoping to slowly accumulate the necessary documentation to make it usable to the scientific community.
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